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» Alignments of RNA Structures
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85
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BMCBI
2008
145views more  BMCBI 2008»
14 years 9 months ago
Directed acyclic graph kernels for structural RNA analysis
Background: Recent discoveries of a large variety of important roles for non-coding RNAs (ncRNAs) have been reported by numerous researchers. In order to analyze ncRNAs by kernel ...
Kengo Sato, Toutai Mituyama, Kiyoshi Asai, Yasubum...
88
Voted
BIOCOMP
2009
14 years 10 months ago
Consensus RNA Secondary Structure Prediction by Ranking k-Length Stems
The accurate computational prediction of RNA secondary structures is a difficult task, but an important one, since RNA structure is usually more evolutionarily conserved than prima...
Denise Y. F. Mak, Gary Benson
RECOMB
2006
Springer
15 years 9 months ago
Detecting the Dependent Evolution of Biosequences
Abstract. A probabilistic graphical model is developed in order to detect the dependent evolution between different sites in biological sequences. Given a multiple sequence alignme...
Jeremy Darot, Chen-Hsiang Yeang, David Haussler
NAR
2010
116views more  NAR 2010»
14 years 4 months ago
Freiburg RNA Tools: a web server integrating IntaRNA, ExpaRNA and LocARNA
The Freiburg RNA tools web server integrates three tools for the advanced analysis of RNA in a common webbased user interface. The tools IntaRNA, ExpaRNA, and LocARNA support the ...
Cameron Smith, Steffen Heyne, Andreas S. Richter, ...
ISMB
1993
14 years 10 months ago
Detection of Correlations in tRNA Sequences with Structural Implications
Using a flexible representation of biological sequences, we have performed a comparative analysis of 1208 known tRNA sequences. We believe we our technique is a more sensitive met...
Tod M. Klingler, Douglas L. Brutlag