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BMCBI
2010
129views more  BMCBI 2010»
14 years 9 months ago
Uncovering packaging features of co-regulated modules based on human protein interaction and transcriptional regulatory networks
Background: Network co-regulated modules are believed to have the functionality of packaging multiple biological entities, and can thus be assumed to coordinate many biological fu...
Lina Chen, Hong Wang, Liangcai Zhang, Wan Li, Qian...
BMCBI
2010
196views more  BMCBI 2010»
14 years 7 months ago
Content-based microarray search using differential expression profiles
Background: With the expansion of public repositories such as the Gene Expression Omnibus (GEO), we are rapidly cataloging cellular transcriptional responses to diverse experiment...
Jesse M. Engreitz, Alexander A. Morgan, Joel Dudle...
BMCBI
2005
169views more  BMCBI 2005»
14 years 9 months ago
MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
Background: Cis-regulatory modules are combinations of regulatory elements occurring in close proximity to each other that control the spatial and temporal expression of genes. Th...
Voichita D. Marinescu, Isaac S. Kohane, Alberto Ri...
WWW
2007
ACM
15 years 10 months ago
Tag clouds for summarizing web search results
In this paper, we describe an application, PubCloud that uses tag clouds for the summarization of results from queries over the PubMed database of biomedical literature. PubCloud ...
Benjamin M. Good, Byron Yu-Lin Kuo, Mark D. Wilkin...
IIE
2008
149views more  IIE 2008»
14 years 9 months ago
Information Technologies for Biology Education: Computerized Electrophysiology of Plant Cells
Abstract. Biology has moved from a bench-based discipline to a bioinformational science in modern times but application of computational and analytical methods of informatics in it...
Vilma Kisnieriene, Kastytis Beitas, Vidmantas Saka...