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RECOMB
2004
Springer
16 years 4 months ago
Aligning alignments exactly
d abstract) John Kececioglu and Dean Starrett Department of Computer Science The University of Arizona Tucson AZ 85721, USA A basic computational problem that arises in both the...
John D. Kececioglu, Dean Starrett
RECOMB
2003
Springer
16 years 4 months ago
Designing seeds for similarity search in genomic DNA
Large-scale comparison of genomic DNA is of fundamental importance in annotating functional elements of genomes. To perform large comparisons efficiently, BLAST (Methods: Companio...
Jeremy Buhler, Uri Keich, Yanni Sun
CADE
2006
Springer
16 years 4 months ago
Solving Sparse Linear Constraints
Linear arithmetic decision procedures form an important part of theorem provers for program verification. In most verification benchmarks, the linear arithmetic constraints are dom...
Shuvendu K. Lahiri, Madanlal Musuvathi
OSDI
2002
ACM
16 years 4 months ago
Taming Aggressive Replication in the Pangaea Wide-Area File System
Pangaea is a wide-area file system that supports data sharing among a community of widely distributed users. It is built on a symmetrically decentralized infrastructure that consi...
Yasushi Saito, Christos T. Karamanolis, Magnus Kar...
VLDB
2002
ACM
184views Database» more  VLDB 2002»
16 years 4 months ago
Database indexing for large DNA and protein sequence collections
Our aim is to develop new database technologies for the approximate matching of unstructured string data using indexes. We explore the potential of the suffix tree data structure i...
Ela Hunt, Malcolm P. Atkinson, Robert W. Irving
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