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» An optimal algorithm to generate tilings
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114
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BMCBI
2007
146views more  BMCBI 2007»
15 years 2 months ago
Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
Background: Transcriptional modules (TM) consist of groups of co-regulated genes and transcription factors (TF) regulating their expression. Two high-throughput (HT) experimental ...
Xiangdong Liu, Walter J. Jessen, Siva Sivaganesan,...
SIGMETRICS
2008
ACM
181views Hardware» more  SIGMETRICS 2008»
15 years 1 months ago
Counter braids: a novel counter architecture for per-flow measurement
Fine-grained network measurement requires routers and switches to update large arrays of counters at very high link speed (e.g. 40 Gbps). A naive algorithm needs an infeasible amo...
Yi Lu, Andrea Montanari, Balaji Prabhakar, Sarang ...
CIKM
2010
Springer
15 years 14 days ago
FacetCube: a framework of incorporating prior knowledge into non-negative tensor factorization
Non-negative tensor factorization (NTF) is a relatively new technique that has been successfully used to extract significant characteristics from polyadic data, such as data in s...
Yun Chi, Shenghuo Zhu
128
Voted
TC
2010
15 years 8 days ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
GIS
2005
ACM
16 years 2 months ago
ASPEN: an adaptive spatial peer-to-peer network
Geographic Information Systems (GIS) are increasingly managing very large sets of data and hence a centralized data repository may not always provide the most scalable solution. H...
Haojun Wang, Roger Zimmermann, Wei-Shinn Ku