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    BMCBI
    2006
    108views more  BMCBI 2006»
    RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits
    14 years 11 months ago
    RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits
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    Background: Until today, analysis of 16S ribosomal RNA (rRNA) sequences has been the de-facto gold standard for the assessment of phylogenetic relationships among prokaryotes. How...
    Hanno Teeling, Frank Oliver Glöckner
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    BMCBI
    2006
    151views more  BMCBI 2006»
    Modeling Sage data with a truncated gamma-Poisson model
    14 years 11 months ago
    Modeling Sage data with a truncated gamma-Poisson model
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    Background: Serial Analysis of Gene Expressions (SAGE) produces gene expression measurements on a discrete scale, due to the finite number of molecules in the sample. This means t...
    Helene H. Thygesen, Aeilko H. Zwinderman
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    BMCBI
    2006
    156views more  BMCBI 2006»
    Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models
    14 years 11 months ago
    Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models
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    Background: Horizontal gene transfer (HGT) is considered a strong evolutionary force shaping the content of microbial genomes in a substantial manner. It is the difference in spee...
    Stephan Waack, Oliver Keller, Roman Asper, Thomas ...
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    BMCBI
    2006
    149views more  BMCBI 2006»
    Curation of viral genomes: challenges, applications and the way forward
    14 years 11 months ago
    Curation of viral genomes: challenges, applications and the way forward
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    Background: Whole genome sequence data is a step towards generating the 'parts list' of life to understand the underlying principles of Biocomplexity. Genome sequencing ...
    Urmila Kulkarni-Kale, Shriram Bhosle, G. Sunitha M...
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    BMCBI
    2006
    78views more  BMCBI 2006»
    Subfamily logos: visualization of sequence deviations at alignment positions with high information content
    14 years 11 months ago
    Subfamily logos: visualization of sequence deviations at alignment positions with high information content
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    Background: Recognition of relevant sequence deviations can be valuable for elucidating functional differences between protein subfamilies. Interesting residues at highly conserve...
    Eric Beitz
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