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BMCBI
2005
153views more  BMCBI 2005»
14 years 9 months ago
Learning Statistical Models for Annotating Proteins with Function Information using Biomedical Text
Background: The BioCreative text mining evaluation investigated the application of text mining methods to the task of automatically extracting information from text in biomedical ...
Soumya Ray, Mark Craven
CICLING
2010
Springer
15 years 2 months ago
Extraction of Genic Interactions with the Recursive Logical Theory of an Ontology
We introduce an Information Extraction (IE) system which uses the logical theory of an ontology as a generalisation of the typical information extraction patterns to extract biolog...
Alain-Pierre Manine, Érick Alphonse, Philip...
CSB
2005
IEEE
139views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Predicting gene function by combining expression and interaction data
In this study we combined the spurious protein interaction data from the Database of Interacting Proteins with the recently published gene expression data of S. cerevisiae grown w...
Rogier J. P. van Berlo, Lodewyk F. A. Wessels, S. ...
BMCBI
2010
114views more  BMCBI 2010»
14 years 9 months ago
Detection of gene orthology from gene co-expression and protein interaction networks
Background: Ortholog detection methods present a powerful approach for finding genes that participate in similar biological processes across different organisms, extending our und...
Fadi Towfic, Susan VanderPlas, Casey A. Oliver, Ol...
BMCBI
2010
136views more  BMCBI 2010»
14 years 9 months ago
A hub-attachment based method to detect functional modules from confidence-scored protein interactions and expression profiles
Background: Many research results show that the biological systems are composed of functional modules. Members in the same module usually have common functions. This is useful inf...
Chia-Hao Chin, Shu-Hwa Chen, Chin-Wen Ho, Ming-Tat...