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BMCBI
2007
149views more  BMCBI 2007»
15 years 17 days ago
Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors
Background: Evolutionary conservation has been used successfully to help identify cis-acting DNA regions that are important in regulating tissue-specific gene expression. Motivate...
Xueping Yu, Jimmy J. Lin, Donald J. Zack, Jiang Qi...
95
Voted
IJFCS
2007
111views more  IJFCS 2007»
15 years 14 days ago
Involutively Bordered Words
In this paper we study a generalization of the classical notions of bordered and unbordered words, motivated by DNA computing. DNA strands can be viewed as finite strings over th...
Lila Kari, Kalpana Mahalingam
99
Voted
SI3D
2010
ACM
15 years 7 months ago
Frankenrigs: building character rigs from multiple sources
We present a new rigging and skinning method which uses a database of partial rigs extracted from a set of source characters. Given a target mesh and a set of joint locations, our...
Christian Miller, Okan Arikan, Don Fussell
ICLP
2007
Springer
15 years 4 months ago
OnEQL: An Ontology Efficient Query Language Engine for the Semantic Web
Abstract. In this paper we describe the OnEQL system, a query engine that implements optimization techniques and evaluation strategies to speed up the evaluation time of querying a...
Edna Ruckhaus, Maria-Esther Vidal, Eduardo Ruiz
105
Voted
BMCBI
2002
128views more  BMCBI 2002»
15 years 11 days ago
Correlating overrepresented upstream motifs to gene expression: a computational approach to regulatory element discovery in euka
Background: Gene regulation in eukaryotes is mainly effected through transcription factors binding to rather short recognition motifs generally located upstream of the coding regi...
Michele Caselle, Ferdinando Di Cunto, Paolo Prover...