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CSB
2004
IEEE
151views Bioinformatics» more  CSB 2004»
15 years 7 months ago
Gridding and Compression of Microarray Images
With the recent explosion of interest in microarray technology, massive amounts of microarray images are currently being produced. The storage and the transmission of this type of...
Stefano Lonardi, Yu Luo
CSB
2004
IEEE
106views Bioinformatics» more  CSB 2004»
15 years 7 months ago
Positive Sample Only Learning (PSOL) for Predicting RNA Genes in E. coli
RNA genes lack most of the signals used for protein gene identification. A major shortcoming of previous discriminative methods to distinguish functional RNA (fRNA) genes from oth...
Richard F. Meraz, Xiaofeng He, Chris H. Q. Ding, S...
CSB
2004
IEEE
256views Bioinformatics» more  CSB 2004»
15 years 7 months ago
SUPERCONTIGS: A Contig Scaffolding Tool
SUPERCONTIGS is a genome-finishing tool that orders, orients and groups contigs based on clone pair information and an alignment with a related genome. The program can be used in ...
Daniela Puiu
BIRD
2008
Springer
119views Bioinformatics» more  BIRD 2008»
15 years 5 months ago
Implementation of a Swap Matching Algorithm Using a Graph Theoretic Model
The swap matching problem consists if finding a pattern in a text, while allowing for transpositions in the pattern. A new approach using a graph-theoretic model was presented in [...
Pavlos Antoniou, Costas S. Iliopoulos, Inuka Jayas...
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Voted
BIRD
2008
Springer
221views Bioinformatics» more  BIRD 2008»
15 years 5 months ago
Comparison of Exact String Matching Algorithms for Biological Sequences
Exact matching of single patterns in DNA and amino acid sequences is studied. We performed an extensive experimental comparison of algorithms presented in the literature. In additi...
Petri Kalsi, Hannu Peltola, Jorma Tarhio