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BIBE
2007
IEEE
113views Bioinformatics» more  BIBE 2007»
15 years 11 months ago
Quantitative and Probabilistic Modeling in Pathway Logic
—This paper presents a study of possible extensions of Pathway Logic to represent and reason about semiquantitative and probabilistic aspects of biological processes. The underly...
Alessandro Abate, Yu Bai, Nathalie Sznajder, Carol...
ISBRA
2007
Springer
15 years 11 months ago
Delta: A Toolset for the Structural Analysis of Biological Sequences on a 3D Triangular Lattice
Abstract. The lattice approach to biological structural analysis was made popular by the HP model for protein folding, but had not been used previously for RNA secondary structure ...
Minghui Jiang, Martin Mayne, Joel Gillespie
130
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BIBE
2006
IEEE
15 years 11 months ago
Extending Pattern Branching to Handle Challenging Instances
We consider the planted motif search problem, a problem that arises from the need to find transcription factor-binding sites in genomic information. One of the fastest non-exact a...
Jaime Davila, Sanguthevar Rajasekaran
CSB
2005
IEEE
167views Bioinformatics» more  CSB 2005»
15 years 10 months ago
Considerations in Making Microarray Cross-Platform Correlations
Comparison and integration of expression data derived from diverse microarray platforms is challenging. Factors affecting cross-platform comparison of microarray data include the ...
Manohar Kollegal, Sudeshna Adak, Richard Shippy, T...
CSB
2005
IEEE
116views Bioinformatics» more  CSB 2005»
15 years 10 months ago
DockingShop: a Tool for Interactive Protein Docking
The molecular docking problem is to determine how molecules interact with other molecules and plays a key role in understanding how cells function. DockingShop is an integrated en...
Ting-Cheng Lu, Jinhui Ding, Silvia N. Crivelli