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BIBE
2008
IEEE
101views Bioinformatics» more  BIBE 2008»
15 years 7 months ago
Ontology-inferred phylogeny reconstruction for analyzing the evolutionary relationships between species: Ontological inference v
We propose the use of formal ontological inferencing, rather than cladistics, to reconstruct phylogeny trees and to analyze the evolutionary relationships between species. For this...
Arash Shaban-Nejad, Volker Haarslev
BIBM
2008
IEEE
106views Bioinformatics» more  BIBM 2008»
15 years 7 months ago
Invariance Kernel of Biological Regulatory Networks
: The analysis of Biological Regulatory Network (BRN) leads to compute the set of the possible behaviours of the biological components. These behaviours are seen as trajectories an...
Jamil Ahmad, Olivier Roux
BIRD
2008
Springer
110views Bioinformatics» more  BIRD 2008»
15 years 7 months ago
SVM-Based Local Search for Gene Selection and Classification of Microarray Data
Abstract. This paper presents a SVM-based local search (SVM-LS) approach to the problem of gene selection and classification of microarray data. The proposed approach is highlighte...
Jose Crispin Hernandez Hernandez, Béatrice ...
BIBM
2010
IEEE
151views Bioinformatics» more  BIBM 2010»
15 years 3 months ago
Rex: A toolset for reproducing software experiments
Being able to reproduce experiments is the cornerstone of the scientific method. Software experiments are hard to reproduce even if identical hardware is available because externa...
Somu Perianayagam, Gregory R. Andrews, John H. Har...
BIOINFORMATICS
2011
15 years 6 days ago
Algorithms for sorting unsigned linear genomes by the DCJ operations
Motivation: The double cut and join operation (abbreviated as DCJ) has been extensively used for genomic rearrangement. Although the DCJ distance between signed genomes with both ...
Haitao Jiang, Binhai Zhu, Daming Zhu