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TCS
2010
14 years 8 months ago
Detecting synchronisation of biological oscillators by model checking
We define a subclass of timed automata, called oscillator timed automata, suitable to model biological oscillators. Coupled biological oscillators may synchronise, as emerging be...
Ezio Bartocci, Flavio Corradini, Emanuela Merelli,...
IJDMB
2008
128views more  IJDMB 2008»
14 years 10 months ago
Protein homology detection with biologically inspired features and interpretable statistical models
: Computational classification of proteins using methods such as string kernels and Fisher-SVM has demonstrated great success. However, the resulting models do not offer an immedia...
Pai-Hsi Huang, Vladimir Pavlovic
AINA
2005
IEEE
15 years 3 months ago
A Biologically Inspired QoS Routing Algorithm for Mobile Ad Hoc Networks
— This paper presents an Emergent Ad hoc Routing Algorithm with QoS provision (EARA-QoS). This ad hoc QoS routing algorithm is based on a swarm intelligence inspired routing infr...
Zhenyu Liu, Marta Z. Kwiatkowska, Costas C. Consta...
IPPS
2007
IEEE
15 years 4 months ago
Reconfigurable Architecture for Biological Sequence Comparison in Reduced Memory Space
DNA sequence alignment is a very important problem in bioinformatics. The algorithm proposed by Smith-Waterman (SW) is an exact method that obtains optimal local alignments in qua...
Azzedine Boukerche, Jan Mendonca Correa, Alba Cris...
GECCO
2008
Springer
155views Optimization» more  GECCO 2008»
14 years 11 months ago
Modularity and symmetry in computational embryogeny
Modularity and symmetry are two properties observed in almost every engineering and biological structure. The origin of these properties in nature is still unknown. Yet, as engine...
Or Yogev, Andrew A. Shapiro, Erik K. Antonsson