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» Building Genetic Networks for Gene Expression Patterns
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BMCBI
2010
97views more  BMCBI 2010»
14 years 4 months ago
A semi-parametric Bayesian model for unsupervised differential co-expression analysis
Background: Differential co-expression analysis is an emerging strategy for characterizing disease related dysregulation of gene expression regulatory networks. Given pre-defined ...
Johannes M. Freudenberg, Siva Sivaganesan, Michael...
BMCBI
2010
162views more  BMCBI 2010»
14 years 7 months ago
SNPexp - A web tool for calculating and visualizing correlation between HapMap genotypes and gene expression levels
Background: Expression levels for 47294 transcripts in lymphoblastoid cell lines from all 270 HapMap phase II individuals, and genotypes (both HapMap phase II and III) of 3.96 mil...
Kristian Holm, Espen Melum, Andre Franke, Tom H. K...
ISMB
2000
14 years 11 months ago
A Pragmatic Information Extraction Strategy for Gathering Data on Genetic Interactions
We present in this paper a pragmatic strategy to perform information extraction from biologic texts. Since the emergence of the information extraction field, techniques have evolv...
Denys Proux, François Rechenmann, Laurent J...
KDD
2006
ACM
156views Data Mining» more  KDD 2006»
15 years 10 months ago
Discovering significant OPSM subspace clusters in massive gene expression data
Order-preserving submatrixes (OPSMs) have been accepted as a biologically meaningful subspace cluster model, capturing the general tendency of gene expressions across a subset of ...
Byron J. Gao, Obi L. Griffith, Martin Ester, Steve...
84
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ISMDA
2001
Springer
15 years 2 months ago
Web-Enabled Knowledge-Based Analysis of Genetic Data
We present a web-based implementation of GenePath, an intelligent assistant tool for data analysis in functional genomics. GenePath considers mutant data and uses expert-defined pa...
Peter Juvan, Blaz Zupan, Janez Demsar, Ivan Bratko...