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BMCBI
2010
108views more  BMCBI 2010»
15 years 11 days ago
An intuitionistic approach to scoring DNA sequences against transcription factor binding site motifs
Background: Transcription factors (TFs) control transcription by binding to specific regions of DNA called transcription factor binding sites (TFBSs). The identification of TFBSs ...
Fernando Garcia-Alcalde, Armando Blanco, Adrian J....
127
Voted
BMCBI
2008
136views more  BMCBI 2008»
15 years 11 days ago
GPAT: Retrieval of genomic annotation from large genomic position datasets
Background: Recent genome wide transcription factor binding site or chromatin modification mapping analysis techniques, such as chromatin immunoprecipitation (ChIP) linked to DNA ...
Arnaud Krebs, Mattia Frontini, Làszlò...
114
Voted
ALMOB
2006
155views more  ALMOB 2006»
15 years 9 days ago
A phylogenetic generalized hidden Markov model for predicting alternatively spliced exons
Background: An important challenge in eukaryotic gene prediction is accurate identification of alternatively spliced exons. Functional transcripts can go undetected in gene expres...
Jonathan E. Allen, Steven L. Salzberg
80
Voted
ENVSOFT
2008
78views more  ENVSOFT 2008»
15 years 9 days ago
A general water supply planning model: Evaluation of decentralized treatment
Increasing population, diminishing supplies and variable climatic conditions can cause difficulties in meeting water demands; especially in arid regions where water resources are ...
G. Chung, K. Lansey, P. Blowers, P. Brooks, W. Ela...
BMCBI
2006
112views more  BMCBI 2006»
15 years 9 days ago
GENOMEMASKER package for designing unique genomic PCR primers
Background: The design of oligonucleotides and PCR primers for studying large genomes is complicated by the redundancy of sequences. The eukaryotic genomes are particularly diffic...
Reidar Andreson, Eric Reppo, Lauris Kaplinski, Mai...