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136
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RECOMB
2006
Springer
16 years 3 months ago
New Methods for Detecting Lineage-Specific Selection
Abstract. So far, most methods for identifying sequences under selection based on comparative sequence data have either assumed selectional pressures are the same across all branch...
Adam C. Siepel, Katherine S. Pollard, David Haussl...
121
Voted
RECOMB
2002
Springer
16 years 3 months ago
Phase-independent rhythmic analysis of genome-wide expression patterns
We introduce a model-based analysis technique for extracting and characterizing rhythmic expression pro les from genome-wide DNA microarray hybridization data. These patterns are ...
Christopher James Langmead, Anthony K. Yan, C. Rob...
CADE
2007
Springer
16 years 3 months ago
Towards Efficient Satisfiability Checking for Boolean Algebra with Presburger Arithmetic
Boolean Algebra with Presburger Arithmetic (BAPA) is a decidable logic that combines 1) Boolean algebra of sets of uninterpreted elements (BA) and 2) Presburger arithmetic (PA). BA...
Viktor Kuncak, Martin C. Rinard
CADE
2005
Springer
16 years 3 months ago
An Algorithm for Deciding BAPA: Boolean Algebra with Presburger Arithmetic
We describe an algorithm for deciding the first-order multisorted theory BAPA, which combines 1) Boolean algebras of sets of uninterpreted elements (BA) and 2) Presburger arithmeti...
Viktor Kuncak, Huu Hai Nguyen, Martin C. Rinard
OSDI
2006
ACM
16 years 3 months ago
From Uncertainty to Belief: Inferring the Specification Within
Automatic tools for finding software errors require a set of specifications before they can check code: if they do not know what to check, they cannot find bugs. This paper presen...
Ted Kremenek, Paul Twohey, Godmar Back, Andrew Y. ...