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BMCBI
2010
156views more  BMCBI 2010»
14 years 9 months ago
PeakAnalyzer: Genome-wide annotation of chromatin binding and modification loci
Background: Functional genomic studies involving high-throughput sequencing and tiling array applications, such as ChIP-seq and ChIP-chip, generate large numbers of experimentally...
Mali Salmon-Divon, Heidi Dvinge, Kairi Tammoja, Pa...
ALMOB
2006
106views more  ALMOB 2006»
14 years 9 months ago
Multiple sequence alignment with user-defined anchor points
Background: Automated software tools for multiple alignment often fail to produce biologically meaningful results. In such situations, expert knowledge can help to improve the qua...
Burkhard Morgenstern, Sonja J. Prohaska, Dirk P&ou...
BMCBI
2007
136views more  BMCBI 2007»
14 years 9 months ago
Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees
Background: In vertebrates, a large part of gene transcriptional regulation is operated by cisregulatory modules. These modules are believed to be regulating much of the tissue-sp...
Xiaoyu Chen, Mathieu Blanchette
CCS
2006
ACM
15 years 1 months ago
RoleMiner: mining roles using subset enumeration
Role engineering, the task of defining roles and associating permissions to them, is essential to realize the full benefits of the role-based access control paradigm. Essentially,...
Jaideep Vaidya, Vijayalakshmi Atluri, Janice Warne...
GECCO
2008
Springer
182views Optimization» more  GECCO 2008»
14 years 10 months ago
Scaling ant colony optimization with hierarchical reinforcement learning partitioning
This paper merges hierarchical reinforcement learning (HRL) with ant colony optimization (ACO) to produce a HRL ACO algorithm capable of generating solutions for large domains. Th...
Erik J. Dries, Gilbert L. Peterson