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» Clustering Genes Using Heterogeneous Data Sources
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AO
2005
75views more  AO 2005»
14 years 11 months ago
A multi-layered ontology for comparing relationship semantics in conceptual models of databases
Relationships are an integral part of the design of a database. Comparing and integrating relationships from heterogeneous databases requires that the relationships be mapped to ea...
Sandeep Purao, Veda C. Storey
AIPS
2003
15 years 1 months ago
A Multi-Agent System-driven AI Planning Approach to Biological Pathway Discovery
As genomic and proteomic data is collected from highthroughput methods on a daily basis, subcellular components are identified and their in vitro behavior is characterized. Howev...
Salim Khan, William Gillis, Carl Schmidt, Keith De...
BMCBI
2006
129views more  BMCBI 2006»
14 years 12 months ago
A literature-based similarity metric for biological processes
Background: Recent analyses in systems biology pursue the discovery of functional modules within the cell. Recognition of such modules requires the integrative analysis of genome-...
Monica Chagoyen, Pedro Carmona-Saez, Concha Gil, J...
BMCBI
2006
143views more  BMCBI 2006»
14 years 12 months ago
IsoSVM - Distinguishing isoforms and paralogs on the protein level
Background: Recent progress in cDNA and EST sequencing is yielding a deluge of sequence data. Like database search results and proteome databases, this data gives rise to inferred...
Michael Spitzer, Stefan Lorkowski, Paul Cullen, Al...
IJHPCA
2010
105views more  IJHPCA 2010»
14 years 10 months ago
A Pipelined Algorithm for Large, Irregular All-Gather Problems
We describe and evaluate a new, pipelined algorithm for large, irregular all-gather problems. In the irregular all-gather problem each process in a set of processes contributes in...
Jesper Larsson Träff, Andreas Ripke, Christia...