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» Clustering Genes Using Heterogeneous Data Sources
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118
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BMCBI
2008
126views more  BMCBI 2008»
15 years 3 months ago
Relating gene expression data on two-component systems to functional annotations in Escherichia coli
Background: Obtaining physiological insights from microarray experiments requires computational techniques that relate gene expression data to functional information. Traditionall...
Anne M. Denton, Jianfei Wu, Megan K. Townsend, Pre...
ESWS
2008
Springer
15 years 4 months ago
Integrating Open Sources and Relational Data with SPARQL
We believe that the possibility to use SPARQL as a front end to heterogeneous data without significant cost in performance or expressive power is key to RDF taking its rightful pla...
Orri Erling, Ivan Mikhailov
127
Voted
JCP
2006
157views more  JCP 2006»
15 years 2 months ago
CF-GeNe: Fuzzy Framework for Robust Gene Regulatory Network Inference
Most Gene Regulatory Network (GRN) studies ignore the impact of the noisy nature of gene expression data despite its significant influence upon inferred results. This paper present...
Muhammad Shoaib B. Sehgal, Iqbal Gondal, Laurence ...
CANDC
2004
ACM
15 years 2 months ago
The difficult interpretation of transcriptome data: the case of the GATC regulatory network
Genomic analyses on part of Escherichia coli's chromosome had suggested the existence of a GATC regulated network. This has recently been confirmed through a transcriptome an...
Alessandra Riva, Marie-Odile Delorme, Tony Chevali...
RECOMB
2002
Springer
16 years 3 months ago
A new approach to analyzing gene expression time series data
We present algorithms for time-series gene expression analysis that permit the principled estimation of unobserved timepoints, clustering, and dataset alignment. Each expression p...
Ziv Bar-Joseph, Georg Gerber, David K. Gifford, To...