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BMCBI
2011
14 years 4 months ago
The PathOlogist: An Automated Tool for Pathway-Centric Analysis
Background: The PathOlogist is a new tool designed to transform large sets of gene expression data into quantitative descriptors of pathway-level behavior. The tool aims to provid...
Sharon I. Greenblum, Sol Efroni, Carl F. Schaefer,...

Publication
197views
13 years 5 months ago
Convex non-negative matrix factorization for massive datasets
Non-negative matrix factorization (NMF) has become a standard tool in data mining, information retrieval, and signal processing. It is used to factorize a non-negative data matrix ...
C. Thurau, K. Kersting, M. Wahabzada, and C. Bauck...
BMCBI
2010
156views more  BMCBI 2010»
14 years 10 months ago
Comparative classification of species and the study of pathway evolution based on the alignment of metabolic pathways
Background: Pathways provide topical descriptions of cellular circuitry. Comparing analogous pathways reveals intricate insights into individual functional differences among speci...
Adi Mano, Tamir Tuller, Oded Béjà, R...
CSB
2003
IEEE
150views Bioinformatics» more  CSB 2003»
15 years 3 months ago
Algorithms for Bounded-Error Correlation of High Dimensional Data in Microarray Experiments
The problem of clustering continuous valued data has been well studied in literature. Its application to microarray analysis relies on such algorithms as -means, dimensionality re...
Mehmet Koyutürk, Ananth Grama, Wojciech Szpan...
IV
2007
IEEE
178views Visualization» more  IV 2007»
15 years 4 months ago
Viewing the Larger Context of Genomic Data through Horizontal Integration
Genomics is an important emerging scientific field that relies on meaningful data visualization as a key step in analysis. Specifically, most investigation of gene expression micr...
Matthew A. Hibbs, Grant Wallace, Maitreya J. Dunha...