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BMCBI
2011
14 years 11 months ago
Hierarchical graphs for rule-based modeling of biochemical systems
Background: In rule-based modeling, graphs are used to represent molecules: a colored vertex represents a component of a molecule, a vertex attribute represents the internal state...
Nathan W. Lemons, Bin Hu, William S. Hlavacek
IPPS
2007
IEEE
15 years 10 months ago
United-FS: A Logical File System Providing a Single Image of Multiple Physical File Systems on NFS Server
NFS is considered to be the bottleneck in cluster computing environment because of its limited resources and centralized data management. With the development of hardware, NFS ser...
Huan Chen, Yi Zhao, Jin Xiong, Jie Ma, Ninghui Sun
114
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IPPS
2006
IEEE
15 years 10 months ago
MT-ClustalW: multithreading multiple sequence alignment
ClustalW is the most widely used tool for aligning multiple protein or nucleotide sequences. The alignment is achieved via three stages: pairwise alignment, guide tree generation ...
K. Chaichoompu, Surin Kittitornkun, Sissades Tongs...
COMPLIFE
2005
Springer
15 years 9 months ago
MAPPIS: Multiple 3D Alignment of Protein-Protein Interfaces
A protein-protein interface (PPI) is defined by a pair of regions of two interacting protein molecules that are linked by non-covalent bonds. Recognition of conserved 3D patterns ...
Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussi...
ECCV
2004
Springer
15 years 9 months ago
Probabilistic Spatial-Temporal Segmentation of Multiple Sclerosis Lesions
Abstract. In this paper we describe the application of a novel statistical videomodeling scheme to sequences of multiple sclerosis (MS) images taken over time. The analysis of the ...
Allon Shahar, Hayit Greenspan