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DOCENG
2009
ACM
15 years 5 months ago
Annotations with EARMARK for arbitrary, overlapping and out-of order markup
In this paper we propose a novel approach to markup, called Extreme Annotational RDF Markup (EARMARK), using RDF and OWL to annotate features in text content that cannot be mapped...
Silvio Peroni, Fabio Vitali
NAR
2011
305views Computer Vision» more  NAR 2011»
14 years 1 months ago
CDD: a Conserved Domain Database for the functional annotation of proteins
NCBI’s Conserved Domain Database (CDD) is a resource for the annotation of protein sequences with the location of conserved domain footprints, and functional sites inferred from...
Aron Marchler-Bauer, Shennan Lu, John B. Anderson,...
CIKM
2010
Springer
14 years 9 months ago
Third workshop on exploiting semantic annotations in information retrieval (ESAIR): CIKM 2010 workshop
There is an increasing amount of structure on the Web as a result of modern Web languages, user tagging and annotation, and emerging robust NLP tools. These meaningful, semantic, ...
Jaap Kamps, Jussi Karlgren, Ralf Schenkel
BMCBI
2008
124views more  BMCBI 2008»
14 years 11 months ago
A relation based measure of semantic similarity for Gene Ontology annotations
Background: Various measures of semantic similarity of terms in bio-ontologies such as the Gene Ontology (GO) have been used to compare gene products. Such measures of similarity ...
Brendan Sheehan, Aaron J. Quigley, Benoit Gaudin, ...
BMCBI
2008
189views more  BMCBI 2008»
14 years 11 months ago
AnEnPi: identification and annotation of analogous enzymes
Background: Enzymes are responsible for the catalysis of the biochemical reactions in metabolic pathways. Analogous enzymes are able to catalyze the same reactions, but they prese...
Thomas D. Otto, Ana Carolina R. Guimarães, ...