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148
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ALMOB
2006
138views more  ALMOB 2006»
15 years 3 months ago
A combinatorial optimization approach for diverse motif finding applications
Background: Discovering approximately repeated patterns, or motifs, in biological sequences is an important and widely-studied problem in computational molecular biology. Most fre...
Elena Zaslavsky, Mona Singh
141
Voted
PC
2002
114views Management» more  PC 2002»
15 years 3 months ago
Optimizing noncontiguous accesses in MPI-IO
The I/O access patterns of many parallel applications consist of accesses to a large number of small, noncontiguous pieces of data. If an application's I/O needs are met by m...
Rajeev Thakur, William Gropp, Ewing L. Lusk
162
Voted
CVPR
2007
IEEE
16 years 5 months ago
Optimizing Binary MRFs via Extended Roof Duality
Many computer vision applications rely on the efficient optimization of challenging, so-called non-submodular, binary pairwise MRFs. A promising graph cut based approach for optim...
Carsten Rother, Vladimir Kolmogorov, Victor S. Lem...
228
Voted
ASPLOS
2009
ACM
16 years 4 months ago
RapidMRC: approximating L2 miss rate curves on commodity systems for online optimizations
Miss rate curves (MRCs) are useful in a number of contexts. In our research, online L2 cache MRCs enable us to dynamically identify optimal cache sizes when cache-partitioning a s...
David K. Tam, Reza Azimi, Livio Soares, Michael St...
126
Voted
ICS
2009
Tsinghua U.
15 years 10 months ago
Performance modeling and automatic ghost zone optimization for iterative stencil loops on GPUs
Iterative stencil loops (ISLs) are used in many applications and tiling is a well-known technique to localize their computation. When ISLs are tiled across a parallel architecture...
Jiayuan Meng, Kevin Skadron