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» Comparative genome assembly
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91
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BMCBI
2005
88views more  BMCBI 2005»
15 years 15 days ago
Analysis of concordance of different haplotype block partitioning algorithms
Background: Different classes of haplotype block algorithms exist and the ideal dataset to assess their performance would be to comprehensively re-sequence a large genomic region ...
Amit R. Indap, Gabor T. Marth, Craig A. Struble, P...
TODS
2002
92views more  TODS 2002»
15 years 7 days ago
Searching in metric spaces with user-defined and approximate distances
Metric access methods (MAMs), such as the M-tree, are powerful index structures for supporting ty queries on metric spaces, which represent a common abstraction for those searchin...
Paolo Ciaccia, Marco Patella
125
Voted
BIBM
2010
IEEE
161views Bioinformatics» more  BIBM 2010»
14 years 10 months ago
Cis-regulatory module detection using constraint programming
We propose a method for finding CRMs in a set of co-regulated genes. Each CRM consists of a set of binding sites of transcription factors. We wish to find CRMs involving the same t...
Tias Guns, Hong Sun, Kathleen Marchal, Siegfried N...
ICMLA
2010
14 years 10 months ago
Using Randomised Vectors in Transcription Factor Binding Site Predictions
Finding the location of binding sites in DNA is a difficult problem. Although the location of some binding sites have been experimentally identified, other parts of the genome may ...
Faisal Rezwan, Yi Sun, Neil Davey, Rod Adams, Alis...
89
Voted
BMCBI
2006
136views more  BMCBI 2006»
15 years 19 days ago
Java GUI for InterProScan (JIPS): A tool to help process multiple InterProScans and perform ortholog analysis
Background: Recent, rapid growth in the quantity of available genomic data has generated many protein sequences that are not yet biochemically classified. Thus, the prediction of ...
Aijazuddin Syed, Chris Upton