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87
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NAR
2000
120views more  NAR 2000»
15 years 8 days ago
WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction
The WIT (What Is There) (http://wit.mcs.anl.gov/WIT2/ ) system has been designed to support comparative analysis of sequenced genomes and to generate metabolic reconstructions bas...
Ross A. Overbeek, Niels Larsen, Gordon D. Pusch, M...
WABI
2010
Springer
160views Bioinformatics» more  WABI 2010»
14 years 11 months ago
Genomic Distance with DCJ and Indels
The double cut and join (DCJ) operation, introduced by Yancopoulos, Attie and Friedberg in 2005, allows one to represent most rearrangement events in genomes. However, a DCJ cannot...
Marília D. V. Braga, Eyla Willing, Jens Sto...
85
Voted
DNA
2004
Springer
15 years 5 months ago
Efficient Initial Pool Generation for Weighted Graph Problems Using Parallel Overlap Assembly
Most DNA computing algorithms for mathematical problems start with combinatorial generation of an initial pool. Several methods for initialpool generation have been proposed, inclu...
Ji Youn Lee, Hee-Woong Lim, Suk-In Yoo, Byoung-Tak...
143
Voted
IR
2008
15 years 15 days ago
Focused web crawling in the acquisition of comparable corpora
CLIR resources, such as dictionaries and parallel corpora, are scarce for special domains. Obtaining comparable corpora automatically for such domains could be an answer to this p...
Tuomas Talvensaari, Ari Pirkola, Kalervo Järv...
116
Voted
BIBM
2010
IEEE
180views Bioinformatics» more  BIBM 2010»
14 years 10 months ago
CAMBer: An approach to support comparative analysis of multiple bacterial strains
There is a large amount of inconsistency in gene structure annotations of bacterial strains. This inconsistency is a frustrating impedance to effective comparative genomic analysi...
Michal Wozniak, Limsoon Wong, Jerzy Tiuryn