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PPDP
1999
Springer
15 years 5 months ago
A Virtual Machine for a Process Calculus
Abstract. Despite extensive theoretical work on process-calculi, virtual machine specifications and implementations of actual computational models are still scarce. This paper pre...
Luís M. B. Lopes, Fernando M. A. Silva, Vas...
85
Voted
RECOMB
2008
Springer
16 years 1 months ago
Algorithms for Exploring the Space of Gene Tree/Species Tree Reconciliations
We describe algorithms to explore the space of all possible reconciliations between a gene tree and a species tree. We propose an algorithm for generating a random reconciliation, ...
Jean-Philippe Doyon, Cedric Chauve, Sylvie Hamel
134
Voted
JCB
2006
124views more  JCB 2006»
15 years 20 days ago
The Average Common Substring Approach to Phylogenomic Reconstruction
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
Igor Ulitsky, David Burstein, Tamir Tuller, Benny ...
112
Voted
NAR
2007
155views more  NAR 2007»
15 years 6 days ago
Influenza Virus Database (IVDB): an integrated information resource and analysis platform for influenza virus research
Frequent outbreaks of highly pathogenic avian influenza and the increasing data available for comparative analysis require a central database specialized in influenza viruses (IVs...
Suhua Chang, Jiajie Zhang, Xiaoyun Liao, Xinxing Z...
BMCBI
2010
118views more  BMCBI 2010»
15 years 25 days ago
Predicting nucleosome positioning using a duration Hidden Markov Model
Background: The nucleosome is the fundamental packing unit of DNAs in eukaryotic cells. Its detailed positioning on the genome is closely related to chromosome functions. Increasi...
Liqun Xi, Yvonne Fondufe-Mittendorf, Lei Xia, Jare...