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WABI
2009
Springer
142views Bioinformatics» more  WABI 2009»
15 years 4 months ago
Back-Translation for Discovering Distant Protein Homologies
Background: Frameshift mutations in protein-coding DNA sequences produce a drastic change in the resulting protein sequence, which prevents classic protein alignment methods from ...
Marta Gîrdea, Laurent Noé, Gregory Ku...
85
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ICALP
2005
Springer
15 years 3 months ago
Computational Bounds on Hierarchical Data Processing with Applications to Information Security
Motivated by the study of algorithmic problems in the domain of information security, in this paper, we study the complexity of a new class of computations over a collection of va...
Roberto Tamassia, Nikos Triandopoulos
BMCBI
2008
126views more  BMCBI 2008»
14 years 9 months ago
GeneChaser: Identifying all biological and clinical conditions in which genes of interest are differentially expressed
Background: The amount of gene expression data in the public repositories, such as NCBI Gene Expression Omnibus (GEO) has grown exponentially, and provides a gold mine for bioinfo...
Rong Chen, Rohan Mallelwar, Ajit Thosar, Shivkumar...
JSAT
2006
134views more  JSAT 2006»
14 years 9 months ago
Pueblo: A Hybrid Pseudo-Boolean SAT Solver
This paper introduces a new hybrid method for efficiently integrating Pseudo-Boolean (PB) constraints into generic SAT solvers in order to solve PB satisfiability and optimization...
Hossein M. Sheini, Karem A. Sakallah
IJON
2010
178views more  IJON 2010»
14 years 8 months ago
An empirical study of two typical locality preserving linear discriminant analysis methods
: Laplacian Linear Discriminant Analysis (LapLDA) and Semi-supervised Discriminant Analysis (SDA) are two recently proposed LDA methods. They are developed independently with the a...
Lishan Qiao, Limei Zhang, Songcan Chen