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BMCBI
2010
127views more  BMCBI 2010»
14 years 11 months ago
Deriving enzymatic and taxonomic signatures of metagenomes from short read data
Background: We propose a method for deriving enzymatic signatures from short read metagenomic data of unknown species. The short read data are converted to six pseudo-peptide cand...
Uri Weingart, Erez Persi, Uri Gophna, David Horn
JCC
2011
87views more  JCC 2011»
14 years 6 months ago
Determining equilibrium constants for dimerization reactions from molecular dynamics simulations
Abstract: With today’s available computer power, free energy calculations from equilibrium molecular dynamics simulations “via counting” become feasible for an increasing num...
Djurre H. De Jong, Lars V. Schäfer, Alex H. D...
RE
2008
Springer
14 years 10 months ago
Generating Natural Language specifications from UML class diagrams
Early phases of software development are known to be problematic, difficult to manage and errors occurring during these phases are expensive to correct. Many systems have been deve...
Farid Meziane, Nikos Athanasakis, Sophia Ananiadou
CIKM
2011
Springer
13 years 11 months ago
Simultaneous joint and conditional modeling of documents tagged from two perspectives
This paper explores correspondence and mixture topic modeling of documents tagged from two different perspectives. There has been ongoing work in topic modeling of documents with...
Pradipto Das, Rohini K. Srihari, Yun Fu
ICTAI
2007
IEEE
15 years 5 months ago
Establishing Logical Rules from Empirical Data
We review a method of generating logical rules, or axioms, from empirical data. This method, using closed set properties of formal concept analysis, has been previously described ...
John L. Pfaltz