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» Computation of Homology Groups and Generators
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STACS
2010
Springer
15 years 6 months ago
The Remote Point Problem, Small Bias Spaces, and Expanding Generator Sets
Using ε-bias spaces over F2, we show that the Remote Point Problem (RPP), introduced by Alon et al [APY09], has an NC2 algorithm (achieving the same parameters as [APY09]). We stu...
Vikraman Arvind, Srikanth Srinivasan
JSC
2007
71views more  JSC 2007»
14 years 11 months ago
Rational invariants of a group action. Construction and rewriting
Geometric constructions applied to a rational action of an algebraic group lead to a new algorithm for computing rational invariants. A finite generating set of invariants appear...
Evelyne Hubert, Irina A. Kogan
BMCBI
2007
148views more  BMCBI 2007»
14 years 11 months ago
BPhyOG: An interactive server for genome-wide inference of bacterial phylogenies based on overlapping genes
Background: Overlapping genes (OGs) in bacterial genomes are pairs of adjacent genes of which the coding sequences overlap partly or entirely. With the rapid accumulation of seque...
Yingqin Luo, Cong Fu, Da-Yong Zhang, Kui Lin
ACL
2010
14 years 9 months ago
Finding Cognate Groups Using Phylogenies
A central problem in historical linguistics is the identification of historically related cognate words. We present a generative phylogenetic model for automatically inducing cogn...
David Hall, Dan Klein
BMCBI
2008
149views more  BMCBI 2008»
14 years 11 months ago
Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence
Background: Modern proteomes evolved by modification of pre-existing ones. It is extremely important to comparative biology that related proteins be identified as members of the s...
Adriano Barbosa-Silva, Venkata P. Satagopam, Reinh...