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» Computer algebra in systems biology
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BMCBI
2010
110views more  BMCBI 2010»
15 years 2 months ago
Discovering local patterns of co - evolution: computational aspects and biological examples
Background: Co-evolution is the process in which two (or more) sets of orthologs exhibit a similar or correlative pattern of evolution. Co-evolution is a powerful way to learn abo...
Tamir Tuller, Yifat Felder, Martin Kupiec
129
Voted
ALMOB
2006
110views more  ALMOB 2006»
15 years 1 months ago
Computing distribution of scale independent motifs in biological sequences
The use of Chaos Game Representation (CGR) or its generalization, Universal Sequence Maps (USM), to describe the distribution of biological sequences has been found objectionable ...
Jonas S. Almeida, Susana Vinga
111
Voted
VMCAI
2004
Springer
15 years 7 months ago
A Grand Challenge for Computing: Towards Full Reactive Modeling of a Multi-cellular Animal
Biological systems can be modeled beneficially as reactive systems, using languages and tools developed for the construction of man-made systems. Our long-term aim is to model a f...
David Harel
COORDINATION
2005
Springer
15 years 7 months ago
Synchronized Hyperedge Replacement for Heterogeneous Systems
Abstract. We present a framework for modelling heterogeneous distributed systems using graph transformations in the Synchronized Hyperedge Replacement approach, which describes com...
Ivan Lanese, Emilio Tuosto
CONPAR
1992
15 years 6 months ago
Cost Prediction for Load Balancing: Application to Algebraic Computations
A major feature of Computer Algebra, and more generally of non-numerical computations, is the dynamical and non-predictable behaviour of the executions. We then understand that st...
Jean-Louis Roch, A. Vermeerbergen, Gilles Villard