As information extraction (IE) becomes more central to enterprise applications, rule-based IE engines have become increasingly important. In this paper, we describe SystemT, a rul...
Laura Chiticariu, Rajasekar Krishnamurthy, Yunyao ...
Synthetic biology is revolutionizing how we conceptualize and approach the engineering of biological systems. Recent advances in the field are allowing us to expand beyond the con...
The creation of quantitative, simulatable, Systems Biology Markup Language (SBML) models that accurately simulate the system under study is a time-intensive manual process that re...
Reachability analysis and simulation tools for high-level nets spend a significant amount of the computing time in performing enabling tests, determining the assignments under whi...
Background: Graphs and networks are common analysis representations for biological systems. Many traditional graph algorithms such as k-clique, k-coloring, and subgraph matching h...