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ACL
2010
14 years 12 months ago
SystemT: An Algebraic Approach to Declarative Information Extraction
As information extraction (IE) becomes more central to enterprise applications, rule-based IE engines have become increasingly important. In this paper, we describe SystemT, a rul...
Laura Chiticariu, Rajasekar Krishnamurthy, Yunyao ...
DAC
2007
ACM
15 years 5 months ago
Synthetic biology: from bacteria to stem cells
Synthetic biology is revolutionizing how we conceptualize and approach the engineering of biological systems. Recent advances in the field are allowing us to expand beyond the con...
Ron Weiss
JIB
2007
95views more  JIB 2007»
15 years 1 months ago
Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models
The creation of quantitative, simulatable, Systems Biology Markup Language (SBML) models that accurately simulate the system under study is a time-intensive manual process that re...
Allyson L. Lister, Matthew R. Pocock, Anil Wipat
APN
2001
Springer
15 years 6 months ago
Optimising Enabling Tests and Unfoldings of Algebraic System Nets
Reachability analysis and simulation tools for high-level nets spend a significant amount of the computing time in performing enabling tests, determining the assignments under whi...
Marko Mäkelä
BMCBI
2008
115views more  BMCBI 2008»
15 years 2 months ago
BioGraphE: high-performance bionetwork analysis using the Biological Graph Environment
Background: Graphs and networks are common analysis representations for biological systems. Many traditional graph algorithms such as k-clique, k-coloring, and subgraph matching h...
George Chin Jr., Daniel G. Chavarría-Mirand...