The process of gene assembly in ciliates, an ancient group of organisms, is one of the most complex instances of DNA manipulation known in any organism. Three molecular operations...
In this paper, we investigate the computational efficiency of gene rearrangement operations found in ciliates, a type of unicellular organisms. We show how the so-called guided re...
The process of gene assembly in ciliates, an ancient group of organisms, is one of the most complex instances of DNA manipulation known in any organisms. This process is fascinatin...
Tero Harju, Chang Li, Ion Petre, Grzegorz Rozenber...
We consider a graph-theoretical formalization of the process of gene assembly in ciliates introduced in Ehrenfeucht et al (2003), where a gene is modeled as a signed graph. The ge...
Abstract. The intramolecular model for gene assembly in ciliates considers three operations, ld, hi, and dlad that can assemble any gene pattern through folding and recombination: ...
Tero Harju, Ion Petre, Vladimir Rogojin, Grzegorz ...