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141
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ALMOB
2006
155views more  ALMOB 2006»
15 years 3 months ago
A phylogenetic generalized hidden Markov model for predicting alternatively spliced exons
Background: An important challenge in eukaryotic gene prediction is accurate identification of alternatively spliced exons. Functional transcripts can go undetected in gene expres...
Jonathan E. Allen, Steven L. Salzberg
151
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ENTCS
2008
73views more  ENTCS 2008»
15 years 3 months ago
Oracle-Based Partial Evaluation
We present Oracle-Based Partial Evaluation (OBPE), a novel approach to on-line Partial Evaluation (PE) which decides the control strategy to use for each call pattern by using an ...
Claudio Ochoa, Germán Puebla
BMCBI
2006
145views more  BMCBI 2006»
15 years 3 months ago
GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes
Background: Successful realization of a "systems biology" approach to analyzing cells is a grand challenge for our understanding of life. However, current modeling appro...
Kazuharu Arakawa, Yohei Yamada, Kosaku Shinoda, Yo...
143
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BMCBI
2006
95views more  BMCBI 2006»
15 years 3 months ago
A quantitative analysis of secondary RNA structure using domination based parameters on trees
Background: It has become increasingly apparent that a comprehensive database of RNA motifs is essential in order to achieve new goals in genomic and proteomic research. Secondary...
Teresa W. Haynes, Debra J. Knisley, Edith Seier, Y...
BMCBI
2006
100views more  BMCBI 2006»
15 years 3 months ago
Towards a better solution to the shortest common supersequence problem: the deposition and reduction algorithm
Background: The problem of finding a Shortest Common Supersequence (SCS) of a set of sequences is an important problem with applications in many areas. It is a key problem in biol...
Kang Ning, Hon Wai Leong
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