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JSC
2008
96views more  JSC 2008»
15 years 3 months ago
Computing the algebraic relations of C-finite sequences and multisequences
We present an algorithm for computing generators for the ideal of algebraic relations among sequences which are given by homogeneous linear recurrence equations with constant coef...
Manuel Kauers, Burkhard Zimmermann
127
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ICPPW
2005
IEEE
15 years 9 months ago
Gene Sequence Alignment on a Public Computing Platform
Public computing can potentially supply not only computational power but also memory and short term storage resources to grid and cluster scale problems. Gene sequence alignment i...
Stephen Pellicer, Nova Ahmed, Yi Pan, Yao Zheng
140
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ALMOB
2006
110views more  ALMOB 2006»
15 years 3 months ago
Computing distribution of scale independent motifs in biological sequences
The use of Chaos Game Representation (CGR) or its generalization, Universal Sequence Maps (USM), to describe the distribution of biological sequences has been found objectionable ...
Jonas S. Almeida, Susana Vinga
161
Voted
BMCBI
2011
14 years 10 months ago
PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment
Background: The Monte Carlo simulation of sequence evolution is routinely used to assess the performance of phylogenetic inference methods and sequence alignment algorithms. Progr...
Botond Sipos, Tim Massingham, Gregory E. Jordan, N...
125
Voted
BMCBI
2008
105views more  BMCBI 2008»
15 years 3 months ago
Novel computational methods for increasing PCR primer design effectiveness in directed sequencing
Background: Polymerase chain reaction (PCR) is used in directed sequencing for the discovery of novel polymorphisms. As the first step in PCR directed sequencing, effective PCR pr...
Kelvin Li, Anushka Brownley, Timothy B. Stockwell,...