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» Computing the graph-based parallel complexity of gene assemb...
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SC
2009
ACM
15 years 2 months ago
Cloud technologies for bioinformatics applications
Executing large number of independent tasks or tasks that perform minimal inter-task communication in parallel is a common requirement in many domains. In this paper, we present o...
Xiaohong Qiu, Jaliya Ekanayake, Scott Beason, Thil...
ICPPW
2009
IEEE
14 years 7 months ago
Analyzing Checkpointing Trends for Applications on the IBM Blue Gene/P System
Current petascale systems have tens of thousands of hardware components and complex system software stacks, which increase the probability of faults occurring during the lifetime ...
Harish Gapanati Naik, Rinku Gupta, Pete Beckman
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IPPS
2009
IEEE
15 years 4 months ago
High-order stencil computations on multicore clusters
Stencil computation (SC) is of critical importance for broad scientific and engineering applications. However, it is a challenge to optimize complex, highorder SC on emerging clus...
Liu Peng, Richard Seymour, Ken-ichi Nomura, Rajiv ...
IPPS
2007
IEEE
15 years 3 months ago
An Adaptive Semantic Filter for Blue Gene/L Failure Log Analysis
— Frequent failure occurrences are becoming a serious concern to the community of high-end computing, especially when the applications and the underlying systems rapidly grow in ...
Yinglung Liang, Yanyong Zhang, Hui Xiong, Ramendra...
BCS
2008
14 years 11 months ago
Beatbox - A Computer Simulation Environment for Computational Biology of the Heart
Despite over a century's study, the trigger mechanisms of cardiac arrhythmias are poorly understood. Even modern experimental methods do not provide sufficient temporal and s...
Ross McFarlane, Irina V. Biktasheva