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    BMCBI
    2004
    166views more  BMCBI 2004»
    Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models
    14 years 9 months ago
    Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models
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    Background: Many current gene prediction methods use only one model to represent proteincoding regions in a genome, and so are less likely to predict the location of genes that ha...
    Shaun Mahony, James O. McInerney, Terry J. Smith, ...
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    BMCBI
    2004
    151views more  BMCBI 2004»
    Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
    14 years 9 months ago
    Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
    Download  www.biomedcentral.com
    Background: The general problem of RNA secondary structure prediction under the widely used thermodynamic model is known to be NP-complete when the structures considered include a...
    Jens Reeder, Robert Giegerich
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    BMCBI
    2004
    228views more  BMCBI 2004»
    An XML standard for the dissemination of annotated 2D gel electrophoresis data complemented with mass spectrometry results
    14 years 9 months ago
    An XML standard for the dissemination of annotated 2D gel electrophoresis data complemented with mass spectrometry results
    Download  www.biomedcentral.com
    Background: Many proteomics initiatives require a seamless bioinformatics integration of a range of analytical steps between sample collection and systems modeling immediately ass...
    Romesh Stanislaus, Liu Hong Jiang, Martha Swartz, ...
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    BMCBI
    2002
    108views more  BMCBI 2002»
    A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
    14 years 9 months ago
    A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
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    Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
    Sean R. Eddy
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    JCNS
    2000
    73views more  JCNS 2000»
    Models of Calmodulin Trapping and CaM Kinase II Activation in a Dendritic Spine
    14 years 9 months ago
    Models of Calmodulin Trapping and CaM Kinase II Activation in a Dendritic Spine
    Download  cneuro.zool.ohiou.edu
    Activation of calcium/calmodulin-dependent protein kinase II (CaMKII) by calmodulin following calcium entry into the cell is important for long-term potentiation (LTP). Here a mode...
    William Holmes
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