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133
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BMCBI
2010
143views more  BMCBI 2010»
15 years 23 days ago
ETE: a python Environment for Tree Exploration
Background: Many bioinformatics analyses, ranging from gene clustering to phylogenetics, produce hierarchical trees as their main result. These are used to represent the relations...
Jaime Huerta-Cepas, Joaquín Dopazo, Toni Ga...
HPDC
2009
IEEE
15 years 7 months ago
Pluggable parallelisation
This paper presents the concept of pluggable parallelisation that allows scientists to develop “sequential like” codes that can take advantage of multi-core, cluster and grid ...
Rui C. Gonçalves, João Luís S...
ICPADS
2008
IEEE
15 years 7 months ago
Parallel Large Scale Inference of Protein Domain Families
The resolution of combinatorial assortments of protein sequences into domains is a prerequisite for protein sequence interpretation. However the recognition and clustering of homo...
Daniel Kahn, Clément Rezvoy, Fréd&ea...
IPPS
2007
IEEE
15 years 7 months ago
The Next Generation Software Workshop - IPDPS'07
This workshop provides a forum for an overview, project presentations, and discussion of the research fostered and funded initially by the NSF Next Generation Software (NGS) Progr...
Frederica Darema
109
Voted
IEEEPACT
2005
IEEE
15 years 6 months ago
Communication Optimizations for Fine-Grained UPC Applications
Global address space languages like UPC exhibit high performance and portability on a broad class of shared and distributed memory parallel architectures. The most scalable applic...
Wei-Yu Chen, Costin Iancu, Katherine A. Yelick