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BMCBI
2008
121views more  BMCBI 2008»
15 years 4 months ago
OntoDas - a tool for facilitating the construction of complex queries to the Gene Ontology
Background: Ontologies such as the Gene Ontology can enable the construction of complex queries over biological information in a conceptual way, however existing systems to do thi...
Kieran O'Neill, Alexander García Castro, An...
IPPS
2007
IEEE
15 years 11 months ago
Modeling of NAMD's Network Input/Output on Large PC Clusters
This study examined the interplay among processor speed, cluster interconnect and file I/O, using parallel applications to quantify interactions. We focused on a common case wher...
Nancy Tran, Daniel A. Reed
EDBT
2004
ACM
142views Database» more  EDBT 2004»
16 years 4 months ago
Iterative Incremental Clustering of Time Series
We present a novel anytime version of partitional clustering algorithm, such as k-Means and EM, for time series. The algorithm works by leveraging off the multi-resolution property...
Jessica Lin, Michail Vlachos, Eamonn J. Keogh, Dim...
IWCC
1999
IEEE
15 years 8 months ago
Design and Analysis of the Alliance/University of New Mexico Roadrunner Linux SMP SuperCluster
This paper will discuss high performance clustering from a series of critical topics: architectural design, system software infrastructure, and programming environment. This will ...
David A. Bader, Arthur B. Maccabe, Jason R. Mastal...
IPPS
2005
IEEE
15 years 10 months ago
Message Passing for Linux Clusters with Gigabit Ethernet Mesh Connections
Multiple copper-based commodity Gigabit Ethernet (GigE) interconnects (adapters) on a single host can lead to Linux clusters with mesh/torus connections without using expensive sw...
Jie Chen, William A. Watson III, Robert Edwards, W...