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PRL
2011
14 years 19 days ago
Structural matching of 2D electrophoresis gels using deformed graphs
2D electrophoresis is a well known method for protein separation which is extremely useful in the field of proteomics. Each spot in the image represents a protein accumulation an...
Alexandre Noma, Alvaro Pardo, Roberto Marcondes Ce...
IPPS
2007
IEEE
15 years 4 months ago
Programming Distributed Memory Sytems Using OpenMP
OpenMP has emerged as an important model and language extension for shared-memory parallel programming. On shared-memory platforms, OpenMP offers an intuitive, incremental approac...
Ayon Basumallik, Seung-Jai Min, Rudolf Eigenmann
ACL
2006
14 years 11 months ago
Novel Association Measures Using Web Search with Double Checking
A web search with double checking model is proposed to explore the web as a live corpus. Five association measures including variants of Dice, Overlap Ratio, Jaccard, and Cosine, ...
Hsin-Hsi Chen, Ming-Shun Lin, Yu-Chuan Wei
FCCM
2011
IEEE
311views VLSI» more  FCCM 2011»
14 years 1 months ago
String Matching in Hardware Using the FM-Index
—String matching is a ubiquitous problem that arises in a wide range of applications in computing, e.g., packet routing, intrusion detection, web querying, and genome analysis. D...
Edward Fernandez, Walid Najjar, Stefano Lonardi
BMCBI
2008
124views more  BMCBI 2008»
14 years 10 months ago
Inferring modules of functionally interacting proteins using the Bond Energy Algorithm
Background: Non-homology based methods such as phylogenetic profiles are effective for predicting functional relationships between proteins with no considerable sequence or struct...
Ryosuke Watanabe, Enrique Morett, Edgar E. Vallejo