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BMCBI
2008
133views more  BMCBI 2008»
15 years 7 months ago
Towards ontology-driven navigation of the lipid bibliosphere
Background: The indexing of scientific literature and content is a relevant and contemporary requirement within life science information systems. Navigating information available ...
Christopher J. O. Baker, Kanagasabai Rajaraman, We...
BMCBI
2006
95views more  BMCBI 2006»
15 years 7 months ago
XcisClique: analysis of regulatory bicliques
Background: Modeling of cis-elements or regulatory motifs in promoter (upstream) regions of genes is a challenging computational problem. In this work, set of regulatory motifs si...
Amrita Pati, Cecilia Vasquez-Robinet, Lenwood S. H...
CSDA
2006
103views more  CSDA 2006»
15 years 7 months ago
LASS: a tool for the local analysis of self-similarity
The Hurst parameter H characterizes the degree of long-range dependence (and asymptotic selfsimilarity) in stationary time series. Many methods have been developed for the estimat...
Stilian Stoev, Murad S. Taqqu, Cheolwoo Park, Geor...
HIPC
2009
Springer
15 years 5 months ago
Detailed analysis of I/O traces for large scale applications
- In this paper, we present a tool to extract I/O traces from very large applications running at full scale during their production runs. We analyze these traces to gain informatio...
Nithin Nakka, Alok N. Choudhary, Wei-keng Liao, Le...
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BMCBI
2011
15 years 1 months ago
The PathOlogist: An Automated Tool for Pathway-Centric Analysis
Background: The PathOlogist is a new tool designed to transform large sets of gene expression data into quantitative descriptors of pathway-level behavior. The tool aims to provid...
Sharon I. Greenblum, Sol Efroni, Carl F. Schaefer,...