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115
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BMCBI
2010
175views more  BMCBI 2010»
14 years 11 months ago
Towards high performance computing for molecular structure prediction using IBM Cell Broadband Engine - an implementation perspe
Background: RNA structure prediction problem is a computationally complex task, especially with pseudo-knots. The problem is well-studied in existing literature and predominantly ...
S. P. T. Krishnan, Sim Sze Liang, Bharadwaj Veerav...
IPPS
2007
IEEE
15 years 6 months ago
New Results on the Performance Effects of Autocorrelated Flows in Systems
Temporal dependence within the workload of any computing or networking system has been widely recognized as a significant factor affecting performance. More specifically, burstin...
Evgenia Smirni, Qi Zhang, Ningfang Mi, Alma Riska,...
CLUSTER
2002
IEEE
14 years 11 months ago
Open Metadata Formats: Efficient XML-Based Communication for High Performance Computing
High-performance computing faces considerable change as the Internet and the Grid mature. Applications that once were tightly-coupled and monolithic are now decentralized, with co...
Patrick Widener, Greg Eisenhauer, Karsten Schwan, ...
CCGRID
2004
IEEE
15 years 3 months ago
Distributed virtual computers (DVC): simplifying the development of high performance Grid applications
Distributed Virtual Computer (DVC) is a computing environment which simplifies the development and execution of distributed applications on computational grids. DVC provides a sim...
Nut Taesombut, Andrew A. Chien
94
Voted
CLUSTER
2003
IEEE
15 years 5 months ago
A Cluster-Based Solution for High Performance Hmmpfam Using EARTH Execution Model
Hmmpfam is a widely used computation-intensive bioinformatics software for sequence classification. The contribution of this paper is the first largely scalable and robust clust...
Weirong Zhu, Yanwei Niu, Jizhu Lu, Chuan Shen, Gua...