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» Design of Iterated Local Search Algorithms
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BMCBI
2010
101views more  BMCBI 2010»
14 years 9 months ago
Hidden Markov model speed heuristic and iterative HMM search procedure
Background: Profile hidden Markov models (profile-HMMs) are sensitive tools for remote protein homology detection, but the main scoring algorithms, Viterbi or Forward, require con...
L. Steven Johnson, Sean R. Eddy, Elon Portugaly
DAC
2009
ACM
15 years 4 months ago
Yield-driven iterative robust circuit optimization algorithm
This paper proposes an equation-based multi-scenario iterative robust optimization methodology for analog/mixed-signal circuits. We show that due to local circuit performance mono...
Yan Li, Vladimir Stojanovic
AI
2003
Springer
15 years 2 months ago
Hybrid Randomised Neighbourhoods Improve Stochastic Local Search for DNA Code Design
Sets of DNA strands that satisfy combinatorial constraints play an important role in various approaches to biomolecular computation, nanostructure design, and molecular tagging. Th...
Dan C. Tulpan, Holger H. Hoos
CP
2007
Springer
15 years 3 months ago
An Integrated White+Black Box Approach for Designing and Tuning Stochastic Local Search
Abstract. Stochastic Local Search (SLS) is a simple and effective paradigm for attacking a variety of Combinatorial (Optimization) Problems (COP). However, it is often non-trivial...
Steven Halim, Roland H. C. Yap, Hoong Chuin Lau
CP
2005
Springer
15 years 3 months ago
Incremental Algorithms for Local Search from Existential Second-Order Logic
Local search is a powerful and well-established method for solving hard combinatorial problems. Yet, until recently, it has provided very little user support, leading to time-consu...
Magnus Ågren, Pierre Flener, Justin Pearson