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BMCBI
2010
153views more  BMCBI 2010»
15 years 1 months ago
Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massi
Background: Massively parallel sequencing readouts of epigenomic assays are enabling integrative genome-wide analyses of genomic and epigenomic variation. Pash 3.0 performs sequen...
Cristian Coarfa, Fuli Yu, Christopher A. Miller, Z...
152
Voted
BMCBI
2011
14 years 8 months ago
The PathOlogist: An Automated Tool for Pathway-Centric Analysis
Background: The PathOlogist is a new tool designed to transform large sets of gene expression data into quantitative descriptors of pathway-level behavior. The tool aims to provid...
Sharon I. Greenblum, Sol Efroni, Carl F. Schaefer,...
BMCBI
2010
243views more  BMCBI 2010»
15 years 1 months ago
Comparative study of unsupervised dimension reduction techniques for the visualization of microarray gene expression data
Background: Visualization of DNA microarray data in two or three dimensional spaces is an important exploratory analysis step in order to detect quality issues or to generate new ...
Christoph Bartenhagen, Hans-Ulrich Klein, Christia...
SIGSOFT
2010
ACM
14 years 11 months ago
Differential static analysis: opportunities, applications, and challenges
It is widely believed that program analysis can be more closely targeted to the needs of programmers if the program is accompanied by further redundant documentation. This may inc...
Shuvendu K. Lahiri, Kapil Vaswani, C. A. R. Hoare
INTERSPEECH
2010
14 years 8 months ago
Identifying articulatory goals from kinematic data using principal differential analysis
Articulatory goals can be highly indicative of lexical intentions, but are rarely used in speech classification tasks. In this paper we show that principal differential analysis c...
Michael Reimer, Frank Rudzicz