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PPOPP
2006
ACM
15 years 7 months ago
Performance characterization of molecular dynamics techniques for biomolecular simulations
Large-scale simulations and computational modeling using molecular dynamics (MD) continues to make significant impacts in the field of biology. It is well known that simulations...
Sadaf R. Alam, Jeffrey S. Vetter, Pratul K. Agarwa...
SAG
2004
Springer
15 years 7 months ago
A Framework for the Design and Reuse of Grid Workflows
Grid workflows can be seen as special scientific workflows involving high performance and/or high throughput computational tasks. Much work in grid workflows has focused on improvi...
Ilkay Altintas, Adam Birnbaum, Kim Baldridge, Wibk...
101
Voted
ICS
2001
Tsinghua U.
15 years 6 months ago
Slice-processors: an implementation of operation-based prediction
We describe the Slice Processor micro-architecture that implements a generalized operation-based prefetching mechanism. Operation-based prefetchers predict the series of operation...
Andreas Moshovos, Dionisios N. Pnevmatikatos, Amir...
IPPS
2010
IEEE
14 years 11 months ago
Inter-block GPU communication via fast barrier synchronization
The graphics processing unit (GPU) has evolved from a fixedfunction processor with programmable stages to a programmable processor with many fixed-function components that deliver...
Shucai Xiao, Wu-chun Feng
132
Voted
BMCBI
2008
201views more  BMCBI 2008»
15 years 1 months ago
A copula method for modeling directional dependence of genes
Background: Genes interact with each other as basic building blocks of life, forming a complicated network. The relationship between groups of genes with different functions can b...
Jong-Min Kim, Yoon-Sung Jung, Engin A. Sungur, Kap...