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BMCBI
2010
132views more  BMCBI 2010»
14 years 11 months ago
Data structures and compression algorithms for high-throughput sequencing technologies
Background: High-throughput sequencing (HTS) technologies play important roles in the life sciences by allowing the rapid parallel sequencing of very large numbers of relatively s...
Kenny Daily, Paul Rigor, Scott Christley, Xiaohui ...
BMCBI
2008
160views more  BMCBI 2008»
14 years 11 months ago
Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'
Background: The variety of DNA microarray formats and datasets presently available offers an unprecedented opportunity to perform insightful comparisons of heterogeneous data. Cro...
Alexandre Kuhn, Ruth Luthi-Carter, Mauro Delorenzi
96
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ALMOB
2006
135views more  ALMOB 2006»
14 years 11 months ago
P-value based visualization of codon usage data
Two important and not yet solved problems in bacterial genome research are the identification of horizontally transferred genes and the prediction of gene expression levels. Both ...
Peter Meinicke, Thomas Brodag, Wolfgang Florian Fr...
BMCBI
2005
124views more  BMCBI 2005»
14 years 11 months ago
ErmineJ: Tool for functional analysis of gene expression data sets
Background: It is common for the results of a microarray study to be analyzed in the context of biologically-motivated groups of genes such as pathways or Gene Ontology categories...
Homin K. Lee, William Braynen, Kiran Keshav, Paul ...
SAC
2008
ACM
14 years 11 months ago
Knowledge-based semantic clustering
Users of the web are increasingly interested in tracking the appearance of new postings rather than locating existing knowledge. Coupled with this is the emergence of the Web 2.0 ...
John Keeney, Dominic Jones, Dominik Roblek, David ...