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IPPS
2006
IEEE
15 years 11 months ago
Parallelization and performance characterization of protein 3D structure prediction of Rosetta
The prediction of protein 3D structure has become a hot research area in the post-genome era, through which people can understand a protein’s function in health and disease, exp...
Wenlong Li, Tao Wang, Eric Li, D. Baker, Li Jin, S...
134
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IPPS
1999
IEEE
15 years 9 months ago
A Communication Latency Hiding Parallelization of a Traffic Flow Simulation
This work implements and analyses a highway traffic flow simulation based on continuum modeling of traffic dynamics. A traffic-flow simulation was developed and mapped onto a para...
Charles Michael Johnston, Anthony T. Chronopoulos
ICPP
1998
IEEE
15 years 9 months ago
Improving Parallel-Disk Buffer Management using Randomized Writeback
We address the problems of I/O scheduling and buffer management for general reference strings in a parallel I/O system. Using the standard parallel disk model withD disks and a sh...
Mahesh Kallahalla, Peter J. Varman
EUROPAR
2008
Springer
15 years 6 months ago
Reducing Kernel Development Complexity in Distributed Environments
Setting up generic and fully transparent distributed services for clusters implies complex and tedious kernel developments. More flexible approaches such as user-space libraries ar...
Adrien Lebre, Renaud Lottiaux, Erich Focht, Christ...
IPPS
2007
IEEE
15 years 11 months ago
Building the Tree of Life on Terascale Systems
Bayesian phylogenetic inference is an important alternative to maximum likelihood-based phylogenetic method. However, inferring large trees using the Bayesian approach is computat...
Xizhou Feng, Kirk W. Cameron, Carlos P. Sosa, Bria...