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BMCBI
2010
87views more  BMCBI 2010»
14 years 11 months ago
Prodigal: prokaryotic gene recognition and translation initiation site identification
Background: The quality of automated gene prediction in microbial organisms has improved steadily over the past decade, but there is still room for improvement. Increasing the num...
Doug Hyatt, Gwo-Liang Chen, Philip F. LoCascio, Mi...
CORR
2010
Springer
200views Education» more  CORR 2010»
14 years 11 months ago
Unified Compression-Based Acceleration of Edit-Distance Computation
The edit distance problem is a classical fundamental problem in computer science in general, and in combinatorial pattern matching in particular. The standard dynamic programming s...
Danny Hermelin, Gad M. Landau, Shir Landau, Oren W...
BMCBI
2006
150views more  BMCBI 2006»
14 years 11 months ago
CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between clos
Background: The recent accumulation of closely related genomic sequences provides a valuable resource for the elucidation of the evolutionary histories of various organisms. Howev...
Ikuo Uchiyama, Toshio Higuchi, Ichizo Kobayashi
ENTCS
2007
113views more  ENTCS 2007»
14 years 11 months ago
Modular Checkpointing for Atomicity
Transient faults that arise in large-scale software systems can often be repaired by re-executing the code in which they occur. Ascribing a meaningful semantics for safe re-execut...
Lukasz Ziarek, Philip Schatz, Suresh Jagannathan
ORL
2006
105views more  ORL 2006»
14 years 11 months ago
Inventory placement in acyclic supply chain networks
The strategic safety stock placement problem is a constrained separable concave minimization problem and so is solvable, in principle, as a sequence of mixed-integer programming p...
Thomas L. Magnanti, Zuo-Jun Max Shen, Jia Shu, Dav...