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BMCBI
2006
129views more  BMCBI 2006»
13 years 6 months ago
Fast index based algorithms and software for matching position specific scoring matrices
Background: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs in nucleotide as well as amino acid sequences....
Michael Beckstette, Robert Homann, Robert Giegeric...
GECCO
2004
Springer
137views Optimization» more  GECCO 2004»
13 years 11 months ago
Evolving Better Multiple Sequence Alignments
Aligning multiple DNA or protein sequences is a fundamental step in the analyses of phylogeny, homology and molecular structure. Heuristic algorithms are applied because optimal mu...
Luke Sheneman, James A. Foster
CORR
2004
Springer
168views Education» more  CORR 2004»
13 years 6 months ago
Estimating Genome Reversal Distance by Genetic Algorithm
Sorting by reversals is an important problem in inferring the evolutionary relationship between two genomes. The problem of sorting unsigned permutation has been proven to be NP-ha...
Andy Auyeung, Ajith Abraham
ICCV
2009
IEEE
13 years 4 months ago
Unsupervised learning of high-order structural semantics from images
Structural semantics are fundamental to understanding both natural and man-made objects from languages to buildings. They are manifested as repeated structures or patterns and are...
Jizhou Gao, Yin Hu, Jinze Liu, Ruigang Yang
CORR
2008
Springer
104views Education» more  CORR 2008»
13 years 6 months ago
De Bruijn Graph Homomorphisms and Recursive De Bruijn Sequences
This paper presents a method to find new De Bruijn cycles based on ones of lesser order. This is done by mapping a De Bruijn cycle to several vertex disjoint cycles in a De Bruijn ...
Abbas Alhakim, Mufutau Akinwande