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HYBRID
2001
Springer
15 years 2 months ago
Hybrid Modeling and Simulation of Biomolecular Networks
Abstract. In a biological cell, cellular functions and the genetic regulatory apparatus are implemented and controlled by a network of chemical reactions in which regulatory protei...
Rajeev Alur, Calin Belta, Franjo Ivancic
DNA
2007
Springer
127views Bioinformatics» more  DNA 2007»
15 years 3 months ago
Discrete Simulations of Biochemical Dynamics
Abstract. Metabolic P systems, shortly MP systems, are a special class of P systems, introduced for expressing biological metabolism. Their dynamics are computed by metabolic algor...
Vincenzo Manca
PPOPP
2006
ACM
15 years 3 months ago
Performance characterization of molecular dynamics techniques for biomolecular simulations
Large-scale simulations and computational modeling using molecular dynamics (MD) continues to make significant impacts in the field of biology. It is well known that simulations...
Sadaf R. Alam, Jeffrey S. Vetter, Pratul K. Agarwa...
98
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CEC
2007
IEEE
15 years 4 months ago
Graph design by graph grammar evolution
— Determining the optimal topology of a graph is pertinent to many domains, as graphs can be used to model a variety of systems. Evolutionary algorithms constitute a popular opti...
Martin H. Luerssen, David M. W. Powers
60
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IJCAI
1989
14 years 11 months ago
Generating Causal Explanation from a Cardio-Vascular Simulation
In this paper, we present QUALEX, a system and algorithm for generating first-order qualitative causal graphs for tutorial purposes based on de Kleer and Brown's qualitative ...
Sarah A. Douglas, Zheng-Yang Liu