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ICCMS
2009
118views more  ICCMS 2009»
14 years 7 months ago
Optimized Parallel Implementation of Gillespie's First Reaction Method on Graphics Processing Units
The simulation of chemical reacting systems is one of the most challenging topics in Systems Biology, due to their complexity and inherent randomness. The Gillespie's Stochas...
Cristian Dittamo, Davide Cangelosi
CIA
2007
Springer
15 years 3 months ago
From Local Search to Global Behavior: Ad Hoc Network Example
We introduce the Consensual N-Player Prisoner’s Dilemma as a large-scale dilemma. We then present a framework for cooperative consensus formation in large-scale MAS under the N-P...
Osher Yadgar
ECAL
2007
Springer
15 years 3 months ago
A Computational System for Investigating Chemotaxis-Based Cell Aggregation
Abstract. We have developed a software system that simulates chemotaxis-based cell aggregation in 2D. The model implemented within the system consists of such cell behaviors as che...
Manolya Eyiyurekli, Peter I. Lelkes, David E. Bree...
GECCO
2007
Springer
159views Optimization» more  GECCO 2007»
15 years 3 months ago
A systemic computation platform for the modelling and analysis of processes with natural characteristics
Computation in biology and in conventional computer architectures seem to share some features, yet many of their important characteristics are very different. To address this, [1]...
Erwan Le Martelot, Peter J. Bentley, R. Beau Lotto
SIAMSC
2008
149views more  SIAMSC 2008»
14 years 9 months ago
Adaptive Discrete Galerkin Methods Applied to the Chemical Master Equation
In systems biology, the stochastic description of biochemical reaction kinetics is increasingly being employed to model gene regulatory networks and signalling pathways. Mathematic...
Peter Deuflhard, Wilhelm Huisinga, T. Jahnke, Mich...