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» Evaluating Parallel Computing Systems in Bioinformatics
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IPPS
2009
IEEE
15 years 4 months ago
Multi-dimensional characterization of temporal data mining on graphics processors
Through the algorthmic design patterns of data parallelism and task parallelism, the graphics processing unit (GPU) offers the potential to vastly accelerate discovery and innovat...
Jeremy S. Archuleta, Yong Cao, Thomas Scogland, Wu...
EUROPAR
2009
Springer
15 years 4 months ago
Impact of Quad-Core Cray XT4 System and Software Stack on Scientific Computation
An upgrade from dual-core to quad-core AMD processor on the Cray XT system at the Oak Ridge National Laboratory (ORNL) Leadership Computing Facility (LCF) has resulted in significa...
Sadaf R. Alam, Richard F. Barrett, Heike Jagode, J...
BMCBI
2004
156views more  BMCBI 2004»
14 years 9 months ago
DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors
Background: Parallel computing is frequently used to speed up computationally expensive tasks in Bioinformatics. Results: Herein, a parallel version of the multi-alignment program...
Martin Schmollinger, Kay Nieselt, Michael Kaufmann...
IPPS
2007
IEEE
15 years 3 months ago
A Framework for Experimental Validation and Performance Evaluation in Fault Tolerant Distributed System
Performing experimental evaluation of fault tolerant distributed systems is a complex and tedious task, and automating as much as possible of the execution and evaluation of exper...
Hein Meling
IPPS
2003
IEEE
15 years 2 months ago
Modeling Parallel Applications Performance on Heterogeneous Systems
The current technologies have made it possible to execute parallel applications across heterogeneous platforms. However, the performance models available do not provide adequate m...
Jameela Al-Jaroodi, Nader Mohamed, Hong Jiang, Dav...