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» Evolutionary algorithms and dynamic programming
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IPPS
2007
IEEE
15 years 10 months ago
Formal Analysis for Debugging and Performance Optimization of MPI
High-end computing is universally recognized to be a strategic tool for leadership in science and technology. A significant portion of high-end computing is conducted on clusters...
Ganesh Gopalakrishnan, Robert M. Kirby
WWW
2008
ACM
16 years 5 months ago
Enhanced hierarchical classification via isotonic smoothing
Hierarchical topic taxonomies have proliferated on the World Wide Web [5, 18], and exploiting the output space decompositions they induce in automated classification systems is an...
Kunal Punera, Joydeep Ghosh
RECOMB
2006
Springer
16 years 4 months ago
Inferring Gene Orders from Gene Maps Using the Breakpoint Distance
Abstract. Preliminary to most comparative genomics studies is the annotation of chromosomes as ordered sequences of genes. Unfortunately, different genetic mapping techniques usual...
Guillaume Blin, Eric Blais, Pierre Guillon, Mathie...
GPC
2007
Springer
15 years 10 months ago
Optimizing Server Placement for QoS Requirements in Hierarchical Grid Environments
This paper focuses on two problems related to QoS-aware I/O server placement in hierarchical Grid environments. Given a hierarchical network with requests from clients, the network...
Chien-Min Wang, Chun-Chen Hsu, Pangfeng Liu, Hsi-M...
GCB
2004
Springer
223views Biometrics» more  GCB 2004»
15 years 8 months ago
PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays
: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs. In this paper, we present a new nonheuristic algorithm, ...
Michael Beckstette, Dirk Strothmann, Robert Homann...